Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC23.99■■□□□ 1.43
COL18A1P39060 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 AD001527.2-201ENST00000622994 785 ntBASIC23.99■■□□□ 1.43
COL18A1P39060 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.99■■□□□ 1.43
COL18A1P39060 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC23.99■■□□□ 1.43
COL18A1P39060 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC23.99■■□□□ 1.43
COL18A1P39060 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.99■■□□□ 1.43
COL18A1P39060 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 AC023274.1-201ENST00000418278 595 ntBASIC23.98■■□□□ 1.43
COL18A1P39060 AC096633.1-201ENST00000422446 749 ntBASIC23.98■■□□□ 1.43
COL18A1P39060 HNRNPA1P28-201ENST00000424481 961 ntBASIC23.98■■□□□ 1.43
COL18A1P39060 RPS8P6-201ENST00000426177 609 ntBASIC23.98■■□□□ 1.43
COL18A1P39060 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC23.98■■□□□ 1.43
COL18A1P39060 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC23.98■■□□□ 1.43
COL18A1P39060 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
COL18A1P39060 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
COL18A1P39060 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC23.98■■□□□ 1.43
COL18A1P39060 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
COL18A1P39060 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
COL18A1P39060 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 SNCG-201ENST00000348795 684 ntTSL 2 BASIC23.98■■□□□ 1.43
COL18A1P39060 COA5-202ENST00000409997 557 ntTSL 4 BASIC23.98■■□□□ 1.43
COL18A1P39060 BX005266.1-201ENST00000473402 457 ntBASIC23.98■■□□□ 1.43
COL18A1P39060 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC23.98■■□□□ 1.43
COL18A1P39060 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.98■■□□□ 1.43
COL18A1P39060 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC23.98■■□□□ 1.43
COL18A1P39060 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL18A1P39060 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
COL18A1P39060 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
COL18A1P39060 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC23.97■■□□□ 1.43
COL18A1P39060 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC23.97■■□□□ 1.43
COL18A1P39060 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC23.97■■□□□ 1.43
COL18A1P39060 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC23.97■■□□□ 1.43
COL18A1P39060 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC23.97■■□□□ 1.43
COL18A1P39060 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
COL18A1P39060 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.97■■□□□ 1.43
COL18A1P39060 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC23.96■■□□□ 1.43
COL18A1P39060 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 AC108751.1-201ENST00000490852 363 ntBASIC23.96■■□□□ 1.43
COL18A1P39060 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
COL18A1P39060 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC23.96■■□□□ 1.43
COL18A1P39060 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
COL18A1P39060 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC23.96■■□□□ 1.43
COL18A1P39060 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC23.96■■□□□ 1.43
COL18A1P39060 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC23.96■■□□□ 1.43
COL18A1P39060 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC23.96■■□□□ 1.43
COL18A1P39060 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC23.96■■□□□ 1.43
COL18A1P39060 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC23.96■■□□□ 1.43
COL18A1P39060 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC23.95■■□□□ 1.43
COL18A1P39060 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.95■■□□□ 1.43
COL18A1P39060 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
COL18A1P39060 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC23.95■■□□□ 1.43
COL18A1P39060 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
COL18A1P39060 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC23.95■■□□□ 1.42
COL18A1P39060 BEX3-201ENST00000361298 921 ntTSL 2 BASIC23.95■■□□□ 1.42
COL18A1P39060 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
COL18A1P39060 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC23.95■■□□□ 1.42
COL18A1P39060 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.95■■□□□ 1.42
COL18A1P39060 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
COL18A1P39060 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
COL18A1P39060 AC064836.3-201ENST00000607928 673 ntBASIC23.95■■□□□ 1.42
COL18A1P39060 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC23.95■■□□□ 1.42
COL18A1P39060 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL18A1P39060 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL18A1P39060 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC23.95■■□□□ 1.42
COL18A1P39060 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL18A1P39060 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL18A1P39060 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC23.95■■□□□ 1.42
COL18A1P39060 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC23.95■■□□□ 1.42
COL18A1P39060 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms