Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.87■□□□□ 0.61
HMGA1P17096 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
HMGA1P17096 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.87■□□□□ 0.61
HMGA1P17096 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGA1P17096 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGA1P17096 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGA1P17096 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.87■□□□□ 0.61
HMGA1P17096 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGA1P17096 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 AC132008.2-207ENST00000454517 770 ntBASIC18.87■□□□□ 0.61
HMGA1P17096 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.87■□□□□ 0.61
HMGA1P17096 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
HMGA1P17096 AC112698.1-201ENST00000510299 916 ntBASIC18.87■□□□□ 0.61
HMGA1P17096 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HMGA1P17096 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HMGA1P17096 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGA1P17096 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.86■□□□□ 0.61
HMGA1P17096 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HMGA1P17096 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.86■□□□□ 0.61
HMGA1P17096 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
HMGA1P17096 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.86■□□□□ 0.61
HMGA1P17096 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 AC009533.2-201ENST00000543664 586 ntBASIC18.86■□□□□ 0.61
HMGA1P17096 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 TP73-AS1-207ENST00000624167 988 ntBASIC18.86■□□□□ 0.61
HMGA1P17096 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
HMGA1P17096 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.86■□□□□ 0.61
HMGA1P17096 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HMGA1P17096 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGA1P17096 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGA1P17096 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HMGA1P17096 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 INTS4P1-201ENST00000438455 1935 ntBASIC18.85■□□□□ 0.61
HMGA1P17096 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.85■□□□□ 0.61
HMGA1P17096 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGA1P17096 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGA1P17096 AC011467.2-201ENST00000598425 242 ntBASIC18.85■□□□□ 0.61
HMGA1P17096 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGA1P17096 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGA1P17096 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGA1P17096 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGA1P17096 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGA1P17096 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.84■□□□□ 0.61
HMGA1P17096 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms