Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
HMGB1P09429 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
HMGB1P09429 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.53■■□□□ 1.04
HMGB1P09429 AC011558.1-201ENST00000623459 338 ntBASIC21.53■■□□□ 1.04
HMGB1P09429 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGB1P09429 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
HMGB1P09429 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGB1P09429 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGB1P09429 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB1P09429 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
HMGB1P09429 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.52■■□□□ 1.04
HMGB1P09429 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 STARP1-201ENST00000397973 869 ntBASIC21.52■■□□□ 1.04
HMGB1P09429 YBX1P2-201ENST00000489612 999 ntBASIC21.52■■□□□ 1.04
HMGB1P09429 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
HMGB1P09429 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGB1P09429 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
HMGB1P09429 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB1P09429 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGB1P09429 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.52■■□□□ 1.03
HMGB1P09429 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGB1P09429 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGB1P09429 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 AC008764.6-201ENST00000595909 2069 ntBASIC21.51■■□□□ 1.03
HMGB1P09429 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
HMGB1P09429 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.51■■□□□ 1.03
HMGB1P09429 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGB1P09429 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.51■■□□□ 1.03
HMGB1P09429 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGB1P09429 AC139887.4-201ENST00000607877 719 ntBASIC21.51■■□□□ 1.03
HMGB1P09429 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGB1P09429 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGB1P09429 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGB1P09429 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB1P09429 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
HMGB1P09429 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HMGB1P09429 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB1P09429 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.5■■□□□ 1.03
HMGB1P09429 AC113404.2-201ENST00000507884 177 ntBASIC21.5■■□□□ 1.03
HMGB1P09429 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms