Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RTN3O95197 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.21■□□□□ 0.67
RTN3O95197 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.21■□□□□ 0.67
RTN3O95197 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.21■□□□□ 0.67
RTN3O95197 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RTN3O95197 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RTN3O95197 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.21■□□□□ 0.67
RTN3O95197 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
RTN3O95197 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RTN3O95197 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RTN3O95197 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.21■□□□□ 0.67
RTN3O95197 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.2■□□□□ 0.66
RTN3O95197 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.2■□□□□ 0.66
RTN3O95197 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.2■□□□□ 0.66
RTN3O95197 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.2■□□□□ 0.66
RTN3O95197 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.2■□□□□ 0.66
RTN3O95197 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.2■□□□□ 0.66
RTN3O95197 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.2■□□□□ 0.66
RTN3O95197 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.2■□□□□ 0.66
RTN3O95197 AC090616.6-201ENST00000582640 721 ntBASIC19.2■□□□□ 0.66
RTN3O95197 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RTN3O95197 AC092329.2-201ENST00000598402 547 ntBASIC19.2■□□□□ 0.66
RTN3O95197 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.2■□□□□ 0.66
RTN3O95197 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
RTN3O95197 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RTN3O95197 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RTN3O95197 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.2■□□□□ 0.66
RTN3O95197 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
RTN3O95197 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.19■□□□□ 0.66
RTN3O95197 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RTN3O95197 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.19■□□□□ 0.66
RTN3O95197 AC113404.2-201ENST00000507884 177 ntBASIC19.19■□□□□ 0.66
RTN3O95197 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.19■□□□□ 0.66
RTN3O95197 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.19■□□□□ 0.66
RTN3O95197 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.19■□□□□ 0.66
RTN3O95197 AC092119.3-201ENST00000612618 583 ntBASIC19.19■□□□□ 0.66
RTN3O95197 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.19■□□□□ 0.66
RTN3O95197 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RTN3O95197 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.19■□□□□ 0.66
RTN3O95197 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RTN3O95197 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RTN3O95197 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RTN3O95197 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
RTN3O95197 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 AL133373.2-201ENST00000623187 2828 ntBASIC19.18■□□□□ 0.66
RTN3O95197 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.18■□□□□ 0.66
RTN3O95197 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
RTN3O95197 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RTN3O95197 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.18■□□□□ 0.66
RTN3O95197 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.18■□□□□ 0.66
RTN3O95197 AP002383.4-201ENST00000442518 975 ntBASIC19.18■□□□□ 0.66
RTN3O95197 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.18■□□□□ 0.66
RTN3O95197 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 AP002414.4-201ENST00000589764 1148 ntBASIC19.18■□□□□ 0.66
RTN3O95197 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RTN3O95197 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.18■□□□□ 0.66
RTN3O95197 KRT18P1-202ENST00000452408 1331 ntBASIC19.18■□□□□ 0.66
RTN3O95197 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.18■□□□□ 0.66
RTN3O95197 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RTN3O95197 AL353692.3-201ENST00000407031 1396 ntBASIC19.18■□□□□ 0.66
RTN3O95197 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 AP000997.3-201ENST00000623333 2250 ntBASIC19.17■□□□□ 0.66
RTN3O95197 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTN3O95197 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.17■□□□□ 0.66
RTN3O95197 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
RTN3O95197 MIR3180-1-201ENST00000580374 94 ntBASIC19.17■□□□□ 0.66
RTN3O95197 MIR3180-3-201ENST00000584616 94 ntBASIC19.17■□□□□ 0.66
RTN3O95197 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms