Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 AC211429.1-201ENST00000415277 523 ntBASIC21.23■□□□□ 0.99
CDKL5O76039 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.23■□□□□ 0.99
CDKL5O76039 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CDKL5O76039 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CDKL5O76039 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.23■□□□□ 0.99
CDKL5O76039 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CDKL5O76039 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.22■□□□□ 0.99
CDKL5O76039 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.22■□□□□ 0.99
CDKL5O76039 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.22■□□□□ 0.99
CDKL5O76039 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.22■□□□□ 0.99
CDKL5O76039 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.22■□□□□ 0.99
CDKL5O76039 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.22■□□□□ 0.99
CDKL5O76039 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.22■□□□□ 0.99
CDKL5O76039 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CDKL5O76039 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.22■□□□□ 0.99
CDKL5O76039 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDKL5O76039 AC093010.1-201ENST00000473625 1624 ntBASIC21.22■□□□□ 0.99
CDKL5O76039 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 AC073508.3-201ENST00000619697 1419 ntBASIC21.21■□□□□ 0.99
CDKL5O76039 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.21■□□□□ 0.99
CDKL5O76039 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.21■□□□□ 0.99
CDKL5O76039 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CDKL5O76039 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.21■□□□□ 0.99
CDKL5O76039 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CDKL5O76039 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.21■□□□□ 0.99
CDKL5O76039 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.21■□□□□ 0.99
CDKL5O76039 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDKL5O76039 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CDKL5O76039 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDKL5O76039 AC005521.1-201ENST00000393351 872 ntBASIC21.2■□□□□ 0.98
CDKL5O76039 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.2■□□□□ 0.98
CDKL5O76039 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CDKL5O76039 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.2■□□□□ 0.98
CDKL5O76039 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.2■□□□□ 0.98
CDKL5O76039 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
CDKL5O76039 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDKL5O76039 HTR7P1-202ENST00000624664 4411 ntBASIC21.2■□□□□ 0.98
CDKL5O76039 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
CDKL5O76039 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CDKL5O76039 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDKL5O76039 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms