Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VPS4BO75351 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS4BO75351 AP000593.1-201ENST00000393668 712 ntBASIC17.93■□□□□ 0.46
VPS4BO75351 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 CKBP1-201ENST00000565489 1086 ntBASIC17.93■□□□□ 0.46
VPS4BO75351 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 AC026271.3-201ENST00000571884 352 ntBASIC17.93■□□□□ 0.46
VPS4BO75351 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VPS4BO75351 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS4BO75351 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS4BO75351 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
VPS4BO75351 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 AC067852.2-201ENST00000590513 2313 ntBASIC17.93■□□□□ 0.46
VPS4BO75351 AL109659.2-201ENST00000606809 1674 ntBASIC17.93■□□□□ 0.46
VPS4BO75351 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4BO75351 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4BO75351 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS4BO75351 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4BO75351 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS4BO75351 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
VPS4BO75351 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS4BO75351 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS4BO75351 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS4BO75351 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS4BO75351 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS4BO75351 AL121894.2-201ENST00000602977 491 ntBASIC17.91■□□□□ 0.46
VPS4BO75351 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VPS4BO75351 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS4BO75351 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS4BO75351 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.9■□□□□ 0.46
VPS4BO75351 FLJ13224-201ENST00000313737 1514 ntBASIC17.9■□□□□ 0.46
VPS4BO75351 TSPY14P-201ENST00000303979 915 ntBASIC17.9■□□□□ 0.46
VPS4BO75351 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS4BO75351 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS4BO75351 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS4BO75351 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms