Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 MIR3180-1-201ENST00000580374 94 ntBASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 RN7SL510P-201ENST00000581311 263 ntBASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 MIR3180-3-201ENST00000584616 94 ntBASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 LINC01711-201ENST00000598340 967 ntBASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 AL157888.1-201ENST00000631930 593 ntBASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
TMX2-CTNND1H3BSU7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 TSPY22P-201ENST00000427496 604 ntBASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 AP002414.4-201ENST00000589764 1148 ntBASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 KRT18P1-202ENST00000452408 1331 ntBASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMX2-CTNND1H3BSU7 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 HOXB1-202ENST00000577092 1414 ntBASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMX2-CTNND1H3BSU7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
TMX2-CTNND1H3BSU7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
TMX2-CTNND1H3BSU7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
TMX2-CTNND1H3BSU7 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.89■□□□□ 0.45
TMX2-CTNND1H3BSU7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.89■□□□□ 0.45
TMX2-CTNND1H3BSU7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.89■□□□□ 0.45
TMX2-CTNND1H3BSU7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TMX2-CTNND1H3BSU7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms