Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 MTCL1P1-201ENST00000446207 792 ntBASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 AC111152.3-201ENST00000569699 673 ntBASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
SMIM28A0A1B0GU29 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMIM28A0A1B0GU29 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMIM28A0A1B0GU29 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMIM28A0A1B0GU29 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
SMIM28A0A1B0GU29 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.52■□□□□ 0.71
SMIM28A0A1B0GU29 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 KRT18P65-201ENST00000439811 1286 ntBASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 IFNL4P1-201ENST00000607083 540 ntBASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMIM28A0A1B0GU29 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 AC132938.6-201ENST00000623828 1655 ntBASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 MINOS1P3-201ENST00000457048 203 ntBASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.5■□□□□ 0.71
SMIM28A0A1B0GU29 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 PHGDH-209ENST00000641074 1780 ntBASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 AC005336.2-201ENST00000593183 939 ntBASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.49■□□□□ 0.71
SMIM28A0A1B0GU29 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms