Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AC093458.2-201ENST00000623150 629 ntBASIC19.08■□□□□ 0.64
USP3Q9Y6I4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.07■□□□□ 0.64
USP3Q9Y6I4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 AC090616.6-201ENST00000582640 721 ntBASIC19.07■□□□□ 0.64
USP3Q9Y6I4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.07■□□□□ 0.64
USP3Q9Y6I4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP3Q9Y6I4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP3Q9Y6I4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 DRAXINP1-201ENST00000437611 948 ntBASIC19.05■□□□□ 0.64
USP3Q9Y6I4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 LINC00167-201ENST00000530583 1419 ntBASIC19.05■□□□□ 0.64
USP3Q9Y6I4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP3Q9Y6I4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP3Q9Y6I4 PHGDH-209ENST00000641074 1780 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms