Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 LINC01568-207ENST00000641790 1380 ntBASIC14.81□□□□□ -0.04
FOXA2Q9Y261 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 CYP2D8P-201ENST00000433633 1490 ntBASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 AP000997.3-201ENST00000623333 2250 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 AL353719.1-201ENST00000566847 864 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 AL023803.3-201ENST00000615559 522 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 AC010947.1-201ENST00000623454 693 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 GMCL1P1-201ENST00000463439 1581 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 PKD1P1-201ENST00000458669 6805 ntBASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
FOXA2Q9Y261 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 KRT18P22-201ENST00000402024 1347 ntBASIC14.79□□□□□ -0.04
FOXA2Q9Y261 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA2Q9Y261 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA2Q9Y261 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms