Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SHROOM4Q9ULL8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 KRT18P41-201ENST00000518924 1277 ntBASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 AC005336.2-201ENST00000593183 939 ntBASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
SHROOM4Q9ULL8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SHROOM4Q9ULL8 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 AC134684.3-201ENST00000641758 218 ntBASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 RPS2P28-201ENST00000314255 741 ntBASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 COA5-202ENST00000409997 557 ntTSL 4 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 AP001269.4-201ENST00000609611 512 ntBASIC34.58■■■■□ 3.13
SHROOM4Q9ULL8 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC34.57■■■■□ 3.13
SHROOM4Q9ULL8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
SHROOM4Q9ULL8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
SHROOM4Q9ULL8 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 DNAJB3-202ENST00000449667 1266 ntBASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 SLC25A24-204ENST00000569674 2357 ntBASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC34.56■■■■□ 3.12
SHROOM4Q9ULL8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 THAP5-204ENST00000438865 868 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 CYMP-203ENST00000474680 1263 ntBASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 RFPL4AP1-201ENST00000530883 850 ntBASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
SHROOM4Q9ULL8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC34.54■■■■□ 3.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms