Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC116407.3-201ENST00000623905 1129 ntBASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 HNRNPDP1-201ENST00000439535 754 ntBASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 AC098818.2-201ENST00000564925 2320 ntBASIC19.02■□□□□ 0.64
LIMD1Q9UGP4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMD1Q9UGP4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMD1Q9UGP4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIMD1Q9UGP4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 BX323043.1-201ENST00000641006 1765 ntBASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AL355877.3-201ENST00000622820 899 ntBASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AC055717.3-201ENST00000622967 595 ntBASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMD1Q9UGP4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 HES2-202ENST00000377836 507 ntTSL 2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 RCN1P2-201ENST00000398357 915 ntBASIC19■□□□□ 0.63
LIMD1Q9UGP4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 SCARNA2-201ENST00000458748 420 ntBASIC19■□□□□ 0.63
LIMD1Q9UGP4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 MTDHP3-201ENST00000594186 672 ntBASIC19■□□□□ 0.63
LIMD1Q9UGP4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMD1Q9UGP4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19■□□□□ 0.63
LIMD1Q9UGP4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 RPS2P28-201ENST00000314255 741 ntBASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms