Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VAPAQ9P0L0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VAPAQ9P0L0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPAQ9P0L0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPAQ9P0L0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AC108860.2-201ENST00000562760 2183 ntBASIC17.29■□□□□ 0.36
VAPAQ9P0L0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 MIR149-201ENST00000384879 89 ntBASIC17.29■□□□□ 0.36
VAPAQ9P0L0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AL359736.2-201ENST00000621992 437 ntBASIC17.29■□□□□ 0.36
VAPAQ9P0L0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPAQ9P0L0 AC093010.1-201ENST00000473625 1624 ntBASIC17.29■□□□□ 0.36
VAPAQ9P0L0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 CA15P1-201ENST00000481698 905 ntBASIC17.28■□□□□ 0.36
VAPAQ9P0L0 AC116562.2-201ENST00000507042 360 ntBASIC17.28■□□□□ 0.36
VAPAQ9P0L0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SIRPAP1-201ENST00000448467 1770 ntBASIC17.28■□□□□ 0.36
VAPAQ9P0L0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.28■□□□□ 0.36
VAPAQ9P0L0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.27■□□□□ 0.36
VAPAQ9P0L0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms