Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 HMGA1P5-201ENST00000412453 271 ntBASIC18.89■□□□□ 0.61
PCDH9Q9HC56 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 LINC01023-201ENST00000606054 436 ntBASIC18.88■□□□□ 0.61
PCDH9Q9HC56 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDH9Q9HC56 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 AC036111.1-201ENST00000533973 1582 ntBASIC18.87■□□□□ 0.61
PCDH9Q9HC56 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 CR769767.2-201ENST00000622735 460 ntBASIC18.87■□□□□ 0.61
PCDH9Q9HC56 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDH9Q9HC56 LINC00896-202ENST00000609602 2128 ntBASIC18.86■□□□□ 0.61
PCDH9Q9HC56 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AL163051.1-201ENST00000569214 1512 ntBASIC18.86■□□□□ 0.61
PCDH9Q9HC56 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 SLC25A3P1-201ENST00000443844 931 ntBASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 SDHAP2-201ENST00000455183 2001 ntBASIC18.86■□□□□ 0.61
PCDH9Q9HC56 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms