Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.91■□□□□ 0.14
COL12A1Q99715 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL12A1Q99715 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.91■□□□□ 0.14
COL12A1Q99715 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.91■□□□□ 0.14
COL12A1Q99715 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL12A1Q99715 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.91■□□□□ 0.14
COL12A1Q99715 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.91■□□□□ 0.14
COL12A1Q99715 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
COL12A1Q99715 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
COL12A1Q99715 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL12A1Q99715 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL12A1Q99715 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.9■□□□□ 0.14
COL12A1Q99715 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
COL12A1Q99715 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.9■□□□□ 0.14
COL12A1Q99715 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.9■□□□□ 0.14
COL12A1Q99715 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.9■□□□□ 0.14
COL12A1Q99715 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
COL12A1Q99715 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL12A1Q99715 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.9■□□□□ 0.14
COL12A1Q99715 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
COL12A1Q99715 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.9■□□□□ 0.14
COL12A1Q99715 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.9■□□□□ 0.14
COL12A1Q99715 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.9■□□□□ 0.14
COL12A1Q99715 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.9■□□□□ 0.14
COL12A1Q99715 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.9■□□□□ 0.14
COL12A1Q99715 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL12A1Q99715 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
COL12A1Q99715 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.89■□□□□ 0.13
COL12A1Q99715 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.89■□□□□ 0.13
COL12A1Q99715 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.89■□□□□ 0.13
COL12A1Q99715 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC15.89■□□□□ 0.13
COL12A1Q99715 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 AC099778.1-201ENST00000568593 1911 ntBASIC15.89■□□□□ 0.13
COL12A1Q99715 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.89■□□□□ 0.13
COL12A1Q99715 MIR6799-201ENST00000620297 69 ntBASIC15.89■□□□□ 0.13
COL12A1Q99715 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.89■□□□□ 0.13
COL12A1Q99715 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.89■□□□□ 0.13
COL12A1Q99715 Z82202.1-201ENST00000623446 1880 ntBASIC15.89■□□□□ 0.13
COL12A1Q99715 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.89■□□□□ 0.13
COL12A1Q99715 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.89■□□□□ 0.13
COL12A1Q99715 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL12A1Q99715 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.88■□□□□ 0.13
COL12A1Q99715 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 HCG4B-203ENST00000450128 991 ntBASIC15.88■□□□□ 0.13
COL12A1Q99715 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.88■□□□□ 0.13
COL12A1Q99715 NKAPP1-205ENST00000585790 367 ntBASIC15.88■□□□□ 0.13
COL12A1Q99715 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.88■□□□□ 0.13
COL12A1Q99715 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.88■□□□□ 0.13
COL12A1Q99715 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL12A1Q99715 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms