Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 FAM86EP-206ENST00000510506 987 ntBASIC18.13■□□□□ 0.49
VPS35Q96QK1 AC024563.2-201ENST00000603282 481 ntBASIC18.13■□□□□ 0.49
VPS35Q96QK1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VPS35Q96QK1 GMCL1P1-201ENST00000463439 1581 ntBASIC18.13■□□□□ 0.49
VPS35Q96QK1 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS35Q96QK1 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS35Q96QK1 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS35Q96QK1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 AL645929.1-201ENST00000420084 975 ntBASIC18.11■□□□□ 0.49
VPS35Q96QK1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 AC005332.1-201ENST00000577698 1310 ntBASIC18.11■□□□□ 0.49
VPS35Q96QK1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms