Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 FAM215A-202ENST00000632077 792 ntBASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 AC009154.2-201ENST00000621177 724 ntBASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
USHBP1Q8N6Y0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 AC125634.1-201ENST00000438758 1403 ntBASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USHBP1Q8N6Y0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 HIST2H3DP1-201ENST00000401004 416 ntBASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 AC139530.3-201ENST00000620344 690 ntBASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 PAN3-AS1-201ENST00000563843 1351 ntBASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USHBP1Q8N6Y0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 MIR940-201ENST00000401276 94 ntBASIC24■■□□□ 1.43
USHBP1Q8N6Y0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC073648.2-201ENST00000510116 352 ntBASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 SART3-203ENST00000546611 1184 ntBASIC24■■□□□ 1.43
USHBP1Q8N6Y0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC106730.1-201ENST00000566722 1090 ntBASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC008687.5-201ENST00000593746 558 ntBASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms