Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 AL023284.2-201ENST00000405850 579 ntBASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 AL355355.2-201ENST00000442321 338 ntBASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 MYC-208ENST00000641036 567 ntBASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 GPAT2P1-201ENST00000444924 1672 ntBASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 ABALON-201ENST00000629058 1903 ntBASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CLIP4Q8N3C7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLIP4Q8N3C7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 CRYGFP-201ENST00000418459 633 ntBASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 AC026471.5-201ENST00000615068 467 ntBASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 OR6D1P-202ENST00000641007 5290 ntBASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP4Q8N3C7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms