Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 AC139887.4-201ENST00000607877 719 ntBASIC16.19■□□□□ 0.18
SKA3Q8IX90 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SKA3Q8IX90 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SKA3Q8IX90 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SKA3Q8IX90 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SKA3Q8IX90 AL163051.1-201ENST00000569214 1512 ntBASIC16.19■□□□□ 0.18
SKA3Q8IX90 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SKA3Q8IX90 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 RCN1P1-201ENST00000400413 996 ntBASIC16.18■□□□□ 0.18
SKA3Q8IX90 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 GCSHP2-201ENST00000560971 527 ntBASIC16.18■□□□□ 0.18
SKA3Q8IX90 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 AC092865.7-201ENST00000641832 219 ntBASIC16.18■□□□□ 0.18
SKA3Q8IX90 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 BCL2-203ENST00000589955 5011 ntBASIC16.18■□□□□ 0.18
SKA3Q8IX90 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.18■□□□□ 0.18
SKA3Q8IX90 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SKA3Q8IX90 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AC010240.3-201ENST00000607688 395 ntBASIC16.17■□□□□ 0.18
SKA3Q8IX90 AC011558.1-201ENST00000623459 338 ntBASIC16.17■□□□□ 0.18
SKA3Q8IX90 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AL031432.5-201ENST00000641059 760 ntBASIC16.17■□□□□ 0.18
SKA3Q8IX90 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SKA3Q8IX90 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SKA3Q8IX90 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SKA3Q8IX90 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SKA3Q8IX90 AL133373.2-201ENST00000623187 2828 ntBASIC16.16■□□□□ 0.18
SKA3Q8IX90 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SKA3Q8IX90 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SKA3Q8IX90 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SKA3Q8IX90 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SKA3Q8IX90 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SKA3Q8IX90 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.16■□□□□ 0.18
SKA3Q8IX90 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms