Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP3Q7Z494 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 AC073621.1-201ENST00000392730 636 ntBASIC24.69■■□□□ 1.54
NPHP3Q7Z494 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 MIR4469-201ENST00000583919 79 ntBASIC24.69■■□□□ 1.54
NPHP3Q7Z494 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 AC125437.2-201ENST00000625180 2167 ntBASIC24.69■■□□□ 1.54
NPHP3Q7Z494 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP3Q7Z494 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 KRT18P2-201ENST00000447938 1258 ntBASIC24.68■■□□□ 1.54
NPHP3Q7Z494 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 BX005266.1-201ENST00000473402 457 ntBASIC24.68■■□□□ 1.54
NPHP3Q7Z494 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP3Q7Z494 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 SDCCAG3P1-201ENST00000589292 1150 ntBASIC24.67■■□□□ 1.54
NPHP3Q7Z494 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 AC073592.4-201ENST00000623827 446 ntBASIC24.67■■□□□ 1.54
NPHP3Q7Z494 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.67■■□□□ 1.54
NPHP3Q7Z494 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 SLC4A1APP2-201ENST00000424054 1259 ntBASIC24.66■■□□□ 1.54
NPHP3Q7Z494 HTR5BP-201ENST00000430851 1154 ntBASIC24.66■■□□□ 1.54
NPHP3Q7Z494 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 AC099343.3-201ENST00000605834 2503 ntBASIC24.66■■□□□ 1.54
NPHP3Q7Z494 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP3Q7Z494 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 AC112698.1-201ENST00000510299 916 ntBASIC24.65■■□□□ 1.54
NPHP3Q7Z494 AC136632.2-201ENST00000512891 861 ntBASIC24.65■■□□□ 1.54
NPHP3Q7Z494 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP3Q7Z494 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 FAM8A3P-201ENST00000427218 844 ntBASIC24.64■■□□□ 1.54
NPHP3Q7Z494 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
NPHP3Q7Z494 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC24.64■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms