Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 AC135776.1-201ENST00000319817 2481 ntBASIC16.34■□□□□ 0.21
H3F3AP84243 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.34■□□□□ 0.21
H3F3AP84243 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.34■□□□□ 0.21
H3F3AP84243 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.34■□□□□ 0.21
H3F3AP84243 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
H3F3AP84243 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 KRT89P-201ENST00000620027 1478 ntBASIC16.34■□□□□ 0.21
H3F3AP84243 AC135050.7-201ENST00000624508 2218 ntBASIC16.34■□□□□ 0.21
H3F3AP84243 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
H3F3AP84243 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
H3F3AP84243 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
H3F3AP84243 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
H3F3AP84243 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
H3F3AP84243 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
H3F3AP84243 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
H3F3AP84243 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.33■□□□□ 0.2
H3F3AP84243 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.33■□□□□ 0.2
H3F3AP84243 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 AC008687.5-201ENST00000593746 558 ntBASIC16.33■□□□□ 0.2
H3F3AP84243 AL590326.2-201ENST00000625139 305 ntBASIC16.33■□□□□ 0.2
H3F3AP84243 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
H3F3AP84243 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
H3F3AP84243 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.33■□□□□ 0.2
H3F3AP84243 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
H3F3AP84243 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
H3F3AP84243 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.33■□□□□ 0.2
H3F3AP84243 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
H3F3AP84243 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
H3F3AP84243 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
H3F3AP84243 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.32■□□□□ 0.2
H3F3AP84243 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 MIR662-201ENST00000384847 95 ntBASIC16.32■□□□□ 0.2
H3F3AP84243 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.32■□□□□ 0.2
H3F3AP84243 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.32■□□□□ 0.2
H3F3AP84243 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.32■□□□□ 0.2
H3F3AP84243 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
H3F3AP84243 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.32■□□□□ 0.2
H3F3AP84243 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
H3F3AP84243 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.32■□□□□ 0.2
H3F3AP84243 PHGDH-209ENST00000641074 1780 ntBASIC16.32■□□□□ 0.2
H3F3AP84243 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.32■□□□□ 0.2
H3F3AP84243 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
H3F3AP84243 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
H3F3AP84243 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
H3F3AP84243 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
H3F3AP84243 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
H3F3AP84243 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 LINC01311-201ENST00000565162 1445 ntBASIC16.31■□□□□ 0.2
H3F3AP84243 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms