Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.95■□□□□ 0.46
PKNOX1P55347 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.95■□□□□ 0.46
PKNOX1P55347 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PKNOX1P55347 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 AC012618.2-201ENST00000428058 849 ntBASIC17.94■□□□□ 0.46
PKNOX1P55347 SLC25A6P5-201ENST00000435663 894 ntBASIC17.94■□□□□ 0.46
PKNOX1P55347 UBE2SP1-201ENST00000450587 669 ntBASIC17.94■□□□□ 0.46
PKNOX1P55347 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 AC142381.4-202ENST00000563973 229 ntBASIC17.94■□□□□ 0.46
PKNOX1P55347 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.94■□□□□ 0.46
PKNOX1P55347 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.94■□□□□ 0.46
PKNOX1P55347 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PKNOX1P55347 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PKNOX1P55347 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PKNOX1P55347 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PKNOX1P55347 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PKNOX1P55347 AC009053.2-201ENST00000563701 2365 ntBASIC17.94■□□□□ 0.46
PKNOX1P55347 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PKNOX1P55347 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PKNOX1P55347 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.93■□□□□ 0.46
PKNOX1P55347 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 KRT8P50-201ENST00000562022 1438 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
PKNOX1P55347 PRORSD1P-201ENST00000295112 541 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 ABHD17AP1-201ENST00000358206 933 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.93■□□□□ 0.46
PKNOX1P55347 RPS2P55-201ENST00000397318 883 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 TSPY20P-201ENST00000450910 630 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 AC107956.1-201ENST00000494359 873 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.93■□□□□ 0.46
PKNOX1P55347 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.93■□□□□ 0.46
PKNOX1P55347 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.93■□□□□ 0.46
PKNOX1P55347 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.93■□□□□ 0.46
PKNOX1P55347 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.93■□□□□ 0.46
PKNOX1P55347 PRORSD1P-202ENST00000563365 2154 ntBASIC17.93■□□□□ 0.46
PKNOX1P55347 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PKNOX1P55347 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PKNOX1P55347 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PKNOX1P55347 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.92■□□□□ 0.46
PKNOX1P55347 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PKNOX1P55347 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 MIR3180-5-201ENST00000583743 153 ntBASIC17.92■□□□□ 0.46
PKNOX1P55347 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.92■□□□□ 0.46
PKNOX1P55347 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.92■□□□□ 0.46
PKNOX1P55347 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
PKNOX1P55347 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PKNOX1P55347 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PKNOX1P55347 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PKNOX1P55347 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PKNOX1P55347 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PKNOX1P55347 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms