Protein–RNA interactions for Protein: P48729

CSNK1A1, Casein kinase I isoform alpha, humanhuman

Predictions only

Length 337 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1P48729 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 TERF1P1-201ENST00000311003 1181 ntBASIC16.29■□□□□ 0.2
CSNK1A1P48729 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.29■□□□□ 0.2
CSNK1A1P48729 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 AC026471.1-201ENST00000564629 3026 ntBASIC16.29■□□□□ 0.2
CSNK1A1P48729 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSNK1A1P48729 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 SDHAP2-201ENST00000455183 2001 ntBASIC16.28■□□□□ 0.2
CSNK1A1P48729 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.28■□□□□ 0.2
CSNK1A1P48729 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 COX11P1-201ENST00000489116 835 ntBASIC16.28■□□□□ 0.2
CSNK1A1P48729 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 AL023973.1-201ENST00000624619 620 ntBASIC16.28■□□□□ 0.2
CSNK1A1P48729 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSNK1A1P48729 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CSNK1A1P48729 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 LETM1P2-201ENST00000597330 2178 ntBASIC16.27■□□□□ 0.2
CSNK1A1P48729 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSNK1A1P48729 AC005521.1-201ENST00000393351 872 ntBASIC16.27■□□□□ 0.2
CSNK1A1P48729 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 MIR3917-201ENST00000580971 93 ntBASIC16.27■□□□□ 0.2
CSNK1A1P48729 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 AL031432.5-201ENST00000641059 760 ntBASIC16.27■□□□□ 0.2
CSNK1A1P48729 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.27■□□□□ 0.2
CSNK1A1P48729 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CSNK1A1P48729 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSNK1A1P48729 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CSNK1A1P48729 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSNK1A1P48729 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.27■□□□□ 0.19
CSNK1A1P48729 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.27■□□□□ 0.19
CSNK1A1P48729 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CSNK1A1P48729 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms