Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.75■□□□□ 0.59
TOP3BO95985 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.75■□□□□ 0.59
TOP3BO95985 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TOP3BO95985 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.75■□□□□ 0.59
TOP3BO95985 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TOP3BO95985 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
TOP3BO95985 NPAP1P7-201ENST00000613027 823 ntBASIC18.75■□□□□ 0.59
TOP3BO95985 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.75■□□□□ 0.59
TOP3BO95985 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.75■□□□□ 0.59
TOP3BO95985 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TOP3BO95985 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TOP3BO95985 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TOP3BO95985 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.74■□□□□ 0.59
TOP3BO95985 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.74■□□□□ 0.59
TOP3BO95985 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.74■□□□□ 0.59
TOP3BO95985 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TOP3BO95985 AC004870.1-201ENST00000315132 882 ntBASIC18.74■□□□□ 0.59
TOP3BO95985 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.74■□□□□ 0.59
TOP3BO95985 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.74■□□□□ 0.59
TOP3BO95985 KRT17P6-201ENST00000453795 1220 ntBASIC18.74■□□□□ 0.59
TOP3BO95985 AC009078.2-202ENST00000463353 338 ntBASIC18.74■□□□□ 0.59
TOP3BO95985 MIR3652-201ENST00000579335 131 ntBASIC18.74■□□□□ 0.59
TOP3BO95985 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.74■□□□□ 0.59
TOP3BO95985 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TOP3BO95985 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TOP3BO95985 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.74■□□□□ 0.59
TOP3BO95985 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TOP3BO95985 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.73■□□□□ 0.59
TOP3BO95985 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.73■□□□□ 0.59
TOP3BO95985 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.73■□□□□ 0.59
TOP3BO95985 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.73■□□□□ 0.59
TOP3BO95985 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 AL022342.1-201ENST00000400363 863 ntBASIC18.73■□□□□ 0.59
TOP3BO95985 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.73■□□□□ 0.59
TOP3BO95985 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.73■□□□□ 0.59
TOP3BO95985 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.73■□□□□ 0.59
TOP3BO95985 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.73■□□□□ 0.59
TOP3BO95985 CKBP1-201ENST00000565489 1086 ntBASIC18.73■□□□□ 0.59
TOP3BO95985 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
TOP3BO95985 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.73■□□□□ 0.59
TOP3BO95985 HYMAI.1-201ENST00000620949 238 ntBASIC18.73■□□□□ 0.59
TOP3BO95985 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.73■□□□□ 0.59
TOP3BO95985 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TOP3BO95985 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TOP3BO95985 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TOP3BO95985 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TOP3BO95985 LTB4R2-202ENST00000528054 3092 ntBASIC18.72■□□□□ 0.59
TOP3BO95985 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.72■□□□□ 0.59
TOP3BO95985 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.72■□□□□ 0.59
TOP3BO95985 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.72■□□□□ 0.59
TOP3BO95985 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TOP3BO95985 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.72■□□□□ 0.59
TOP3BO95985 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.72■□□□□ 0.59
TOP3BO95985 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 AL353719.1-201ENST00000566847 864 ntBASIC18.72■□□□□ 0.59
TOP3BO95985 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.72■□□□□ 0.59
TOP3BO95985 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.72■□□□□ 0.59
TOP3BO95985 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.72■□□□□ 0.59
TOP3BO95985 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TOP3BO95985 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms