Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
CDKL5O76039 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.27■■□□□ 1
CDKL5O76039 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.27■■□□□ 1
CDKL5O76039 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDKL5O76039 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CDKL5O76039 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
CDKL5O76039 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CDKL5O76039 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
CDKL5O76039 REXO1L9P-201ENST00000604264 2108 ntBASIC21.26■□□□□ 0.99
CDKL5O76039 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
CDKL5O76039 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 TERF1P1-201ENST00000311003 1181 ntBASIC21.26■□□□□ 0.99
CDKL5O76039 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.26■□□□□ 0.99
CDKL5O76039 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.26■□□□□ 0.99
CDKL5O76039 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDKL5O76039 GCSHP2-201ENST00000560971 527 ntBASIC21.26■□□□□ 0.99
CDKL5O76039 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
CDKL5O76039 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.26■□□□□ 0.99
CDKL5O76039 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDKL5O76039 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.26■□□□□ 0.99
CDKL5O76039 LINC01126-201ENST00000623515 1646 ntBASIC21.26■□□□□ 0.99
CDKL5O76039 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDKL5O76039 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
CDKL5O76039 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
CDKL5O76039 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.25■□□□□ 0.99
CDKL5O76039 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.25■□□□□ 0.99
CDKL5O76039 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDKL5O76039 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDKL5O76039 LINC01023-201ENST00000606054 436 ntBASIC21.25■□□□□ 0.99
CDKL5O76039 AL023973.1-201ENST00000624619 620 ntBASIC21.25■□□□□ 0.99
CDKL5O76039 AL157888.1-201ENST00000631930 593 ntBASIC21.25■□□□□ 0.99
CDKL5O76039 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
CDKL5O76039 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDKL5O76039 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.24■□□□□ 0.99
CDKL5O76039 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 PVRIG2P-201ENST00000435460 978 ntBASIC21.24■□□□□ 0.99
CDKL5O76039 BX664615.1-201ENST00000443558 458 ntBASIC21.24■□□□□ 0.99
CDKL5O76039 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CDKL5O76039 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.24■□□□□ 0.99
CDKL5O76039 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CDKL5O76039 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CDKL5O76039 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.24■□□□□ 0.99
CDKL5O76039 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 AC138028.4-201ENST00000564984 1845 ntBASIC21.24■□□□□ 0.99
CDKL5O76039 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CDKL5O76039 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.24■□□□□ 0.99
CDKL5O76039 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDKL5O76039 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.24■□□□□ 0.99
CDKL5O76039 FLJ13224-201ENST00000313737 1514 ntBASIC21.24■□□□□ 0.99
CDKL5O76039 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CDKL5O76039 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDKL5O76039 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms