Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHOX2O60902 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.31■□□□□ 0.52
SHOX2O60902 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.31■□□□□ 0.52
SHOX2O60902 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.31■□□□□ 0.52
SHOX2O60902 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.31■□□□□ 0.52
SHOX2O60902 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.31■□□□□ 0.52
SHOX2O60902 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.31■□□□□ 0.52
SHOX2O60902 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 AC008741.2-201ENST00000612792 3115 ntBASIC18.31■□□□□ 0.52
SHOX2O60902 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHOX2O60902 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.31■□□□□ 0.52
SHOX2O60902 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.31■□□□□ 0.52
SHOX2O60902 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHOX2O60902 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 KRT18P5-201ENST00000436075 1291 ntBASIC18.3■□□□□ 0.52
SHOX2O60902 DUX4L16-201ENST00000555130 1264 ntBASIC18.3■□□□□ 0.52
SHOX2O60902 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOX2O60902 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.3■□□□□ 0.52
SHOX2O60902 BID-214ENST00000617586 542 ntTSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOX2O60902 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOX2O60902 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
SHOX2O60902 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SHOX2O60902 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOX2O60902 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.29■□□□□ 0.52
SHOX2O60902 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SHOX2O60902 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 HTR7P1-201ENST00000538670 1336 ntBASIC18.29■□□□□ 0.52
SHOX2O60902 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 AC016769.1-201ENST00000409132 1010 ntBASIC18.29■□□□□ 0.52
SHOX2O60902 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 KRT18P11-201ENST00000435214 1283 ntBASIC18.29■□□□□ 0.52
SHOX2O60902 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
SHOX2O60902 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOX2O60902 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHOX2O60902 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOX2O60902 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SHOX2O60902 KRT17P1-201ENST00000399211 1546 ntBASIC18.28■□□□□ 0.52
SHOX2O60902 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms