Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 AC010980.2-201ENST00000587099 1412 ntBASIC14.74□□□□□ -0.05
HMGB3O15347 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HMGB3O15347 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 GPX1P1-201ENST00000388829 606 ntBASIC14.73□□□□□ -0.05
HMGB3O15347 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HMGB3O15347 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGB3O15347 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 AC012317.2-201ENST00000623305 2251 ntBASIC14.73□□□□□ -0.05
HMGB3O15347 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HMGB3O15347 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB3O15347 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.73□□□□□ -0.05
HMGB3O15347 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.72□□□□□ -0.05
HMGB3O15347 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 BET1L-204ENST00000410108 637 ntTSL 3 BASIC14.72□□□□□ -0.05
HMGB3O15347 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.72□□□□□ -0.05
HMGB3O15347 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC14.72□□□□□ -0.05
HMGB3O15347 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.72□□□□□ -0.05
HMGB3O15347 NTF6G-201ENST00000591094 616 ntBASIC14.72□□□□□ -0.05
HMGB3O15347 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HMGB3O15347 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HMGB3O15347 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HMGB3O15347 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.72□□□□□ -0.05
HMGB3O15347 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGB3O15347 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HMGB3O15347 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HMGB3O15347 AP006587.1-201ENST00000534129 1502 ntBASIC14.71□□□□□ -0.05
HMGB3O15347 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms