Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 ID1-201ENST00000376105 1233 ntBASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM49D1C9J1S8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 AC128676.1-201ENST00000454392 318 ntBASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 RARRES2P10-201ENST00000564312 460 ntBASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRIM49D1C9J1S8 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 FSCN1P1-201ENST00000568912 1481 ntBASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM49D1C9J1S8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 AL645608.8-201ENST00000606034 2086 ntBASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM49D1C9J1S8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 SDHAP2-201ENST00000455183 2001 ntBASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms