Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AC060766.5-201ENST00000590539 871 ntBASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 AC026185.1-201ENST00000445748 174 ntBASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 KRT8P32-201ENST00000512863 1461 ntBASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
USH1CQ9Y6N9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 RARRES2P6-201ENST00000567333 442 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 C1QL1P1-201ENST00000568105 661 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 SOX15-203ENST00000570788 1093 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 AC008687.6-201ENST00000596318 630 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 MYC-209ENST00000641252 345 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 AC011270.2-201ENST00000624293 2550 ntBASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USH1CQ9Y6N9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms