Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AL499627.1-201ENST00000569373 2188 ntBASIC20.45■□□□□ 0.86
VTA1Q9NP79 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.45■□□□□ 0.86
VTA1Q9NP79 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VTA1Q9NP79 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VTA1Q9NP79 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.45■□□□□ 0.86
VTA1Q9NP79 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 KRT18P65-201ENST00000439811 1286 ntBASIC20.44■□□□□ 0.86
VTA1Q9NP79 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VTA1Q9NP79 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VTA1Q9NP79 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VTA1Q9NP79 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VTA1Q9NP79 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VTA1Q9NP79 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VTA1Q9NP79 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VTA1Q9NP79 AC011467.2-201ENST00000598425 242 ntBASIC20.43■□□□□ 0.86
VTA1Q9NP79 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 IL9RP2-201ENST00000423948 1312 ntBASIC20.43■□□□□ 0.86
VTA1Q9NP79 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 AC125634.1-201ENST00000438758 1403 ntBASIC20.43■□□□□ 0.86
VTA1Q9NP79 INTS4P1-201ENST00000438455 1935 ntBASIC20.43■□□□□ 0.86
VTA1Q9NP79 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.43■□□□□ 0.86
VTA1Q9NP79 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 AC018712.1-201ENST00000455767 687 ntBASIC20.42■□□□□ 0.86
VTA1Q9NP79 FGFR3P6-201ENST00000457012 610 ntBASIC20.42■□□□□ 0.86
VTA1Q9NP79 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.42■□□□□ 0.86
VTA1Q9NP79 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
VTA1Q9NP79 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VTA1Q9NP79 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VTA1Q9NP79 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 AL671883.3-201ENST00000603274 991 ntBASIC20.41■□□□□ 0.86
VTA1Q9NP79 AC148477.8-201ENST00000624298 468 ntBASIC20.41■□□□□ 0.86
VTA1Q9NP79 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VTA1Q9NP79 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.41■□□□□ 0.86
VTA1Q9NP79 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VTA1Q9NP79 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VTA1Q9NP79 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.4■□□□□ 0.86
VTA1Q9NP79 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VTA1Q9NP79 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VTA1Q9NP79 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms