Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 IGHGP-201ENST00000390555 1178 ntBASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 AP000347.1-202ENST00000435868 847 ntBASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 AC079781.3-201ENST00000449110 356 ntBASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 AC024563.2-201ENST00000603282 481 ntBASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AC141586.3-201ENST00000562166 1838 ntBASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AL160237.2-201ENST00000556165 472 ntBASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 AC068587.9-201ENST00000641814 219 ntBASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TM9SF3Q9HD45 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 Z69720.1-201ENST00000601483 472 ntBASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 AC099336.1-202ENST00000602961 463 ntBASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 AL592071.1-201ENST00000611956 408 ntBASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.28■□□□□ 0.52
TM9SF3Q9HD45 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms