Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.93■□□□□ 0.62
PCDH9Q9HC56 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
PCDH9Q9HC56 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 AC211429.1-201ENST00000415277 523 ntBASIC18.92■□□□□ 0.62
PCDH9Q9HC56 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 FAM87A-204ENST00000613235 858 ntBASIC18.92■□□□□ 0.62
PCDH9Q9HC56 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 AC134043.2-201ENST00000624206 2238 ntBASIC18.92■□□□□ 0.62
PCDH9Q9HC56 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDH9Q9HC56 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 MIR3180-5-201ENST00000583743 153 ntBASIC18.91■□□□□ 0.62
PCDH9Q9HC56 AC012306.2-201ENST00000609350 630 ntBASIC18.91■□□□□ 0.62
PCDH9Q9HC56 AC097493.4-201ENST00000641197 219 ntBASIC18.91■□□□□ 0.62
PCDH9Q9HC56 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 AL096828.2-201ENST00000567259 1965 ntBASIC18.91■□□□□ 0.62
PCDH9Q9HC56 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDH9Q9HC56 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDH9Q9HC56 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDH9Q9HC56 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDH9Q9HC56 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 PHGDH-209ENST00000641074 1780 ntBASIC18.89■□□□□ 0.61
PCDH9Q9HC56 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDH9Q9HC56 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms