Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 AP001160.3-201ENST00000601484 763 ntBASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 AC110285.6-201ENST00000617652 491 ntBASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 AL009178.2-201ENST00000597278 2719 ntBASIC19.82■□□□□ 0.76
PKNOX2Q96KN3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 HLA-G-202ENST00000376815 851 ntBASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 HLA-G-203ENST00000376818 1127 ntBASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 PKD1P5-201ENST00000532415 10291 ntBASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
PKNOX2Q96KN3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 AC008406.3-201ENST00000620001 1374 ntBASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX2Q96KN3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX2Q96KN3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms