Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 AL031284.1-201ENST00000419297 478 ntBASIC18.6■□□□□ 0.57
CHFRQ96EP1 AC018712.1-201ENST00000455767 687 ntBASIC18.6■□□□□ 0.57
CHFRQ96EP1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 AL049840.3-201ENST00000602669 611 ntBASIC18.6■□□□□ 0.57
CHFRQ96EP1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 RNF165-205ENST00000588679 2904 ntBASIC18.6■□□□□ 0.57
CHFRQ96EP1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 MIR7706-201ENST00000613747 67 ntBASIC18.59■□□□□ 0.57
CHFRQ96EP1 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.59■□□□□ 0.57
CHFRQ96EP1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 AC005332.7-201ENST00000614046 2005 ntBASIC18.59■□□□□ 0.57
CHFRQ96EP1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHFRQ96EP1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CHFRQ96EP1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CHFRQ96EP1 TP73-AS1-210ENST00000637775 1455 ntBASIC18.58■□□□□ 0.57
CHFRQ96EP1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHFRQ96EP1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.58■□□□□ 0.57
CHFRQ96EP1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHFRQ96EP1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHFRQ96EP1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.58■□□□□ 0.57
CHFRQ96EP1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 AC064862.7-201ENST00000604520 867 ntBASIC18.58■□□□□ 0.56
CHFRQ96EP1 AC008608.2-201ENST00000606089 416 ntBASIC18.58■□□□□ 0.56
CHFRQ96EP1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.58■□□□□ 0.56
CHFRQ96EP1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.58■□□□□ 0.56
CHFRQ96EP1 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 MYLKP1-201ENST00000509077 1580 ntBASIC18.58■□□□□ 0.56
CHFRQ96EP1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.58■□□□□ 0.56
CHFRQ96EP1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHFRQ96EP1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 FGFR3P6-201ENST00000457012 610 ntBASIC18.57■□□□□ 0.56
CHFRQ96EP1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 AP001269.4-201ENST00000609611 512 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms