Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 COX11P1-201ENST00000489116 835 ntBASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 GCSHP2-201ENST00000560971 527 ntBASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 AL023973.1-201ENST00000624619 620 ntBASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 AL031432.5-201ENST00000641059 760 ntBASIC20.33■□□□□ 0.85
CCDC65Q8IXS2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CCDC65Q8IXS2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 AC005521.1-201ENST00000393351 872 ntBASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC65Q8IXS2 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 BX664615.1-201ENST00000443558 458 ntBASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 AC034232.1-201ENST00000506026 1064 ntBASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 AL157888.1-201ENST00000631930 593 ntBASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC65Q8IXS2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms