Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NUDCD3Q8IVD9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.23■□□□□ 0.51
NUDCD3Q8IVD9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
NUDCD3Q8IVD9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 KRASP1-201ENST00000407852 552 ntBASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AL109923.1-201ENST00000618799 583 ntBASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AL023875.1-201ENST00000640777 796 ntBASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AL645608.8-201ENST00000606034 2086 ntBASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NUDCD3Q8IVD9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 AC069544.1-201ENST00000609399 999 ntBASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 AL109659.2-201ENST00000606809 1674 ntBASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.21■□□□□ 0.51
NUDCD3Q8IVD9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AC009053.2-201ENST00000563701 2365 ntBASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AP000593.1-201ENST00000393668 712 ntBASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
NUDCD3Q8IVD9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms