Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC12.7□□□□□ -0.38
CSMD3Q7Z407 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 MCCD1P2-201ENST00000423228 335 ntBASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ANKRD20A8P-203ENST00000641373 517 ntBASIC12.69□□□□□ -0.38
CSMD3Q7Z407 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC008735.5-201ENST00000623544 497 ntBASIC12.69□□□□□ -0.38
CSMD3Q7Z407 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC106028.4-201ENST00000614509 607 ntBASIC12.69□□□□□ -0.38
CSMD3Q7Z407 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CSMD3Q7Z407 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 UBQLN4P1-201ENST00000461599 1801 ntBASIC12.68□□□□□ -0.38
CSMD3Q7Z407 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 MEG3-211ENST00000452514 461 ntTSL 3 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 AC011467.2-201ENST00000598425 242 ntBASIC12.68□□□□□ -0.38
CSMD3Q7Z407 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 AC073621.1-201ENST00000392730 636 ntBASIC12.68□□□□□ -0.38
CSMD3Q7Z407 NKAPP1-205ENST00000585790 367 ntBASIC12.68□□□□□ -0.38
CSMD3Q7Z407 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms