Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CASC4Q6P4E1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.72■□□□□ 0.59
CASC4Q6P4E1 PCDHB18P-201ENST00000524813 2368 ntBASIC18.71■□□□□ 0.59
CASC4Q6P4E1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 AC034236.2-201ENST00000606662 1610 ntBASIC18.71■□□□□ 0.59
CASC4Q6P4E1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 KRT18P41-201ENST00000518924 1277 ntBASIC18.71■□□□□ 0.59
CASC4Q6P4E1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CASC4Q6P4E1 AC093677.2-201ENST00000600169 1863 ntBASIC18.71■□□□□ 0.59
CASC4Q6P4E1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.71■□□□□ 0.58
CASC4Q6P4E1 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CASC4Q6P4E1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 AP000593.1-201ENST00000393668 712 ntBASIC18.7■□□□□ 0.58
CASC4Q6P4E1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.7■□□□□ 0.58
CASC4Q6P4E1 CA15P1-201ENST00000481698 905 ntBASIC18.7■□□□□ 0.58
CASC4Q6P4E1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 REXO1L9P-201ENST00000604264 2108 ntBASIC18.7■□□□□ 0.58
CASC4Q6P4E1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASC4Q6P4E1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.69■□□□□ 0.58
CASC4Q6P4E1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 AP003071.4-201ENST00000562276 1284 ntBASIC18.68■□□□□ 0.58
CASC4Q6P4E1 MIR3180-5-201ENST00000583743 153 ntBASIC18.68■□□□□ 0.58
CASC4Q6P4E1 Z99916.2-201ENST00000604037 246 ntBASIC18.68■□□□□ 0.58
CASC4Q6P4E1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASC4Q6P4E1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms