Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 KRT8P11-201ENST00000409686 1436 ntBASIC16.4■□□□□ 0.22
CCDC58Q4VC31 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 AL138781.1-201ENST00000566567 1274 ntBASIC16.4■□□□□ 0.22
CCDC58Q4VC31 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC58Q4VC31 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CCDC58Q4VC31 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.39■□□□□ 0.22
CCDC58Q4VC31 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.22
CCDC58Q4VC31 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC58Q4VC31 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 LINC01126-201ENST00000623515 1646 ntBASIC16.38■□□□□ 0.21
CCDC58Q4VC31 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.38■□□□□ 0.21
CCDC58Q4VC31 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 FLJ13224-201ENST00000313737 1514 ntBASIC16.38■□□□□ 0.21
CCDC58Q4VC31 AC103702.1-201ENST00000548801 2630 ntBASIC16.38■□□□□ 0.21
CCDC58Q4VC31 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 MYLKP1-201ENST00000509077 1580 ntBASIC16.38■□□□□ 0.21
CCDC58Q4VC31 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC58Q4VC31 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms