Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.05□□□□□ -0.32
COL7A1Q02388 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 LAGE3P1-201ENST00000425356 484 ntBASIC13.05□□□□□ -0.32
COL7A1Q02388 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.05□□□□□ -0.32
COL7A1Q02388 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.05□□□□□ -0.32
COL7A1Q02388 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AL035252.4-201ENST00000624174 288 ntBASIC13.05□□□□□ -0.32
COL7A1Q02388 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.05□□□□□ -0.32
COL7A1Q02388 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.05□□□□□ -0.32
COL7A1Q02388 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 PMPCAP1-201ENST00000508114 1576 ntBASIC13.05□□□□□ -0.32
COL7A1Q02388 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC13.05□□□□□ -0.32
COL7A1Q02388 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.05□□□□□ -0.32
COL7A1Q02388 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.05□□□□□ -0.32
COL7A1Q02388 AC005498.2-205ENST00000593218 784 ntBASIC13.05□□□□□ -0.32
COL7A1Q02388 AC011467.4-201ENST00000594891 528 ntBASIC13.05□□□□□ -0.32
COL7A1Q02388 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.05□□□□□ -0.32
COL7A1Q02388 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 AL163051.1-201ENST00000569214 1512 ntBASIC13.04□□□□□ -0.32
COL7A1Q02388 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.04□□□□□ -0.32
COL7A1Q02388 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.04□□□□□ -0.32
COL7A1Q02388 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.04□□□□□ -0.32
COL7A1Q02388 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
COL7A1Q02388 AJ011932.1-201ENST00000621707 465 ntBASIC13.04□□□□□ -0.32
COL7A1Q02388 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 AL158211.5-201ENST00000623583 2518 ntBASIC13.04□□□□□ -0.32
COL7A1Q02388 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 AC109322.1-201ENST00000524499 1264 ntBASIC13.04□□□□□ -0.32
COL7A1Q02388 PDPK2P-202ENST00000562415 1191 ntBASIC13.04□□□□□ -0.32
COL7A1Q02388 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.04□□□□□ -0.32
COL7A1Q02388 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC13.04□□□□□ -0.32
COL7A1Q02388 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.04□□□□□ -0.32
COL7A1Q02388 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL7A1Q02388 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC13.03□□□□□ -0.32
COL7A1Q02388 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
COL7A1Q02388 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.03□□□□□ -0.32
COL7A1Q02388 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AC112777.1-201ENST00000540175 1423 ntBASIC13.03□□□□□ -0.32
COL7A1Q02388 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.03□□□□□ -0.32
COL7A1Q02388 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.03□□□□□ -0.32
COL7A1Q02388 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.03□□□□□ -0.32
COL7A1Q02388 FP475955.4-201ENST00000623131 1990 ntBASIC13.03□□□□□ -0.32
COL7A1Q02388 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC13.03□□□□□ -0.32
COL7A1Q02388 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms