Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.17□□□□□ -0.3
PRKDCP78527 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.17□□□□□ -0.3
PRKDCP78527 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 AC004449.1-201ENST00000564240 433 ntBASIC13.17□□□□□ -0.3
PRKDCP78527 AC116407.2-201ENST00000613639 860 ntBASIC13.17□□□□□ -0.3
PRKDCP78527 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 PMPCAP1-201ENST00000508114 1576 ntBASIC13.17□□□□□ -0.3
PRKDCP78527 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
PRKDCP78527 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.17□□□□□ -0.3
PRKDCP78527 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 STK25-234ENST00000535007 2459 ntTSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.16□□□□□ -0.3
PRKDCP78527 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.16□□□□□ -0.3
PRKDCP78527 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
PRKDCP78527 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.16□□□□□ -0.3
PRKDCP78527 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC13.16□□□□□ -0.3
PRKDCP78527 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
PRKDCP78527 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
PRKDCP78527 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.16□□□□□ -0.3
PRKDCP78527 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
PRKDCP78527 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.16□□□□□ -0.3
PRKDCP78527 ACTG1P14-201ENST00000446382 1122 ntBASIC13.16□□□□□ -0.3
PRKDCP78527 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 AC004461.1-201ENST00000412461 403 ntBASIC13.16□□□□□ -0.3
PRKDCP78527 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.16□□□□□ -0.3
PRKDCP78527 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.16□□□□□ -0.3
PRKDCP78527 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.16□□□□□ -0.3
PRKDCP78527 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC13.16□□□□□ -0.3
PRKDCP78527 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC13.16□□□□□ -0.3
PRKDCP78527 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
PRKDCP78527 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 TFAMP1-201ENST00000412727 736 ntBASIC13.15□□□□□ -0.3
PRKDCP78527 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 KRT18P41-201ENST00000518924 1277 ntBASIC13.15□□□□□ -0.3
PRKDCP78527 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC13.15□□□□□ -0.3
PRKDCP78527 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 GOLGA2P11-201ENST00000562660 1621 ntBASIC13.15□□□□□ -0.3
PRKDCP78527 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.15□□□□□ -0.3
PRKDCP78527 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.15□□□□□ -0.3
PRKDCP78527 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 AC010507.1-201ENST00000633895 436 ntBASIC13.15□□□□□ -0.3
PRKDCP78527 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
PRKDCP78527 AC073314.1-201ENST00000568729 2216 ntBASIC13.15□□□□□ -0.3
PRKDCP78527 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
PRKDCP78527 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.15□□□□□ -0.31
PRKDCP78527 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
PRKDCP78527 MRPS18AP1-201ENST00000414458 589 ntBASIC13.15□□□□□ -0.31
PRKDCP78527 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
PRKDCP78527 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.15□□□□□ -0.31
PRKDCP78527 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.15□□□□□ -0.31
PRKDCP78527 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
PRKDCP78527 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.14□□□□□ -0.31
PRKDCP78527 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.14□□□□□ -0.31
PRKDCP78527 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.14□□□□□ -0.31
PRKDCP78527 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC13.14□□□□□ -0.31
PRKDCP78527 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
PRKDCP78527 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 HILS1-202ENST00000545329 423 ntBASIC13.14□□□□□ -0.31
PRKDCP78527 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms