Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 AL163051.1-201ENST00000569214 1512 ntBASIC15.74■□□□□ 0.11
ABCA4P78363 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 POM121L3P-201ENST00000419331 1163 ntBASIC15.74■□□□□ 0.11
ABCA4P78363 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.74■□□□□ 0.11
ABCA4P78363 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 RNPS1P1-201ENST00000507437 918 ntBASIC15.74■□□□□ 0.11
ABCA4P78363 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.74■□□□□ 0.11
ABCA4P78363 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.74■□□□□ 0.11
ABCA4P78363 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.74■□□□□ 0.11
ABCA4P78363 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ABCA4P78363 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
ABCA4P78363 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 AC113404.2-201ENST00000507884 177 ntBASIC15.73■□□□□ 0.11
ABCA4P78363 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
ABCA4P78363 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA4P78363 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
ABCA4P78363 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA4P78363 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.73■□□□□ 0.11
ABCA4P78363 PGAM5P1-201ENST00000518923 814 ntBASIC15.73■□□□□ 0.11
ABCA4P78363 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.73■□□□□ 0.11
ABCA4P78363 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.73■□□□□ 0.11
ABCA4P78363 AC145285.3-201ENST00000564603 959 ntBASIC15.73■□□□□ 0.11
ABCA4P78363 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
ABCA4P78363 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.73■□□□□ 0.11
ABCA4P78363 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
ABCA4P78363 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.72■□□□□ 0.11
ABCA4P78363 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA4P78363 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 AC005104.2-201ENST00000427818 678 ntBASIC15.72■□□□□ 0.11
ABCA4P78363 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA4P78363 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 AC096582.2-201ENST00000510860 516 ntBASIC15.72■□□□□ 0.11
ABCA4P78363 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.72■□□□□ 0.11
ABCA4P78363 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.72■□□□□ 0.11
ABCA4P78363 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.72■□□□□ 0.11
ABCA4P78363 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.72■□□□□ 0.11
ABCA4P78363 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ABCA4P78363 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
ABCA4P78363 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
ABCA4P78363 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA4P78363 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.72■□□□□ 0.11
ABCA4P78363 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ABCA4P78363 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ABCA4P78363 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.71■□□□□ 0.11
ABCA4P78363 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ABCA4P78363 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.71■□□□□ 0.11
ABCA4P78363 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCA4P78363 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ABCA4P78363 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms