Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
HDAC4P56524 RCN1P1-201ENST00000400413 996 ntBASIC19.14■□□□□ 0.65
HDAC4P56524 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.14■□□□□ 0.65
HDAC4P56524 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.14■□□□□ 0.65
HDAC4P56524 AC006011.2-201ENST00000621313 1158 ntBASIC19.14■□□□□ 0.65
HDAC4P56524 AC011558.1-201ENST00000623459 338 ntBASIC19.14■□□□□ 0.65
HDAC4P56524 AL157888.1-201ENST00000631930 593 ntBASIC19.14■□□□□ 0.65
HDAC4P56524 AC092865.7-201ENST00000641832 219 ntBASIC19.14■□□□□ 0.65
HDAC4P56524 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.14■□□□□ 0.65
HDAC4P56524 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.14■□□□□ 0.65
HDAC4P56524 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
HDAC4P56524 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.14■□□□□ 0.65
HDAC4P56524 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC4P56524 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC4P56524 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.13■□□□□ 0.65
HDAC4P56524 YBX1P2-201ENST00000489612 999 ntBASIC19.13■□□□□ 0.65
HDAC4P56524 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.13■□□□□ 0.65
HDAC4P56524 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.13■□□□□ 0.65
HDAC4P56524 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.13■□□□□ 0.65
HDAC4P56524 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.13■□□□□ 0.65
HDAC4P56524 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC4P56524 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC4P56524 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC4P56524 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC4P56524 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 GMCL1P1-201ENST00000463439 1581 ntBASIC19.12■□□□□ 0.65
HDAC4P56524 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 AC009065.1-201ENST00000564055 1225 ntBASIC19.12■□□□□ 0.65
HDAC4P56524 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 AC140113.3-201ENST00000605663 199 ntBASIC19.12■□□□□ 0.65
HDAC4P56524 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 AL031432.5-201ENST00000641059 760 ntBASIC19.12■□□□□ 0.65
HDAC4P56524 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 AC090340.1-201ENST00000620778 4980 ntBASIC19.12■□□□□ 0.65
HDAC4P56524 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
HDAC4P56524 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC4P56524 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HDAC4P56524 AL390961.4-201ENST00000623958 2535 ntBASIC19.11■□□□□ 0.65
HDAC4P56524 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.11■□□□□ 0.65
HDAC4P56524 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.11■□□□□ 0.65
HDAC4P56524 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.11■□□□□ 0.65
HDAC4P56524 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.11■□□□□ 0.65
HDAC4P56524 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC4P56524 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.11■□□□□ 0.65
HDAC4P56524 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.11■□□□□ 0.65
HDAC4P56524 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms