Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
PKNOX1P55347 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.98■□□□□ 0.47
PKNOX1P55347 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.98■□□□□ 0.47
PKNOX1P55347 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 SLC25A1P4-201ENST00000567977 778 ntBASIC17.98■□□□□ 0.47
PKNOX1P55347 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
PKNOX1P55347 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PKNOX1P55347 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.98■□□□□ 0.47
PKNOX1P55347 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PKNOX1P55347 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.97■□□□□ 0.47
PKNOX1P55347 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PKNOX1P55347 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PKNOX1P55347 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.97■□□□□ 0.47
PKNOX1P55347 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.97■□□□□ 0.47
PKNOX1P55347 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.97■□□□□ 0.47
PKNOX1P55347 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.97■□□□□ 0.47
PKNOX1P55347 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.97■□□□□ 0.47
PKNOX1P55347 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 AC034236.2-201ENST00000606662 1610 ntBASIC17.97■□□□□ 0.47
PKNOX1P55347 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PKNOX1P55347 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
PKNOX1P55347 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PKNOX1P55347 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
PKNOX1P55347 GPAT2P1-201ENST00000444924 1672 ntBASIC17.96■□□□□ 0.47
PKNOX1P55347 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.96■□□□□ 0.47
PKNOX1P55347 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.96■□□□□ 0.47
PKNOX1P55347 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.96■□□□□ 0.47
PKNOX1P55347 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.96■□□□□ 0.47
PKNOX1P55347 AP001412.1-201ENST00000608405 714 ntBASIC17.96■□□□□ 0.47
PKNOX1P55347 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.96■□□□□ 0.47
PKNOX1P55347 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.47
PKNOX1P55347 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.96■□□□□ 0.47
PKNOX1P55347 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PKNOX1P55347 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.96■□□□□ 0.47
PKNOX1P55347 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.96■□□□□ 0.47
PKNOX1P55347 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PKNOX1P55347 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.96■□□□□ 0.46
PKNOX1P55347 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.46
PKNOX1P55347 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 GNAS-203ENST00000306120 1878 ntBASIC17.95■□□□□ 0.46
PKNOX1P55347 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PKNOX1P55347 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.95■□□□□ 0.46
PKNOX1P55347 AC097488.1-201ENST00000507834 756 ntBASIC17.95■□□□□ 0.46
PKNOX1P55347 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms