Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CXCL12P48061 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 AC125437.2-201ENST00000625180 2167 ntBASIC18.17■□□□□ 0.5
CXCL12P48061 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CXCL12P48061 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CXCL12P48061 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.17■□□□□ 0.5
CXCL12P48061 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.17■□□□□ 0.5
CXCL12P48061 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.17■□□□□ 0.5
CXCL12P48061 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.17■□□□□ 0.5
CXCL12P48061 AC002347.1-201ENST00000569543 541 ntBASIC18.17■□□□□ 0.5
CXCL12P48061 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CXCL12P48061 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.17■□□□□ 0.5
CXCL12P48061 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 AC007967.2-201ENST00000432613 625 ntBASIC18.16■□□□□ 0.5
CXCL12P48061 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.16■□□□□ 0.5
CXCL12P48061 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.16■□□□□ 0.5
CXCL12P48061 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CXCL12P48061 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 LINC00602-201ENST00000629776 2065 ntBASIC18.16■□□□□ 0.5
CXCL12P48061 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.16■□□□□ 0.5
CXCL12P48061 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
CXCL12P48061 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.16■□□□□ 0.5
CXCL12P48061 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL12P48061 AL024508.2-201ENST00000607749 1894 ntBASIC18.16■□□□□ 0.5
CXCL12P48061 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.15■□□□□ 0.5
CXCL12P48061 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.15■□□□□ 0.5
CXCL12P48061 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.15■□□□□ 0.5
CXCL12P48061 MTDHP5-201ENST00000598980 586 ntBASIC18.15■□□□□ 0.5
CXCL12P48061 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CXCL12P48061 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CXCL12P48061 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms