Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.98■□□□□ 0.95
SMARCA1P28370 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.98■□□□□ 0.95
SMARCA1P28370 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.97■□□□□ 0.95
SMARCA1P28370 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SMARCA1P28370 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 AP002383.4-201ENST00000442518 975 ntBASIC20.97■□□□□ 0.95
SMARCA1P28370 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.97■□□□□ 0.95
SMARCA1P28370 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.97■□□□□ 0.95
SMARCA1P28370 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.97■□□□□ 0.95
SMARCA1P28370 AC009113.1-201ENST00000570267 2443 ntBASIC20.97■□□□□ 0.95
SMARCA1P28370 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMARCA1P28370 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.97■□□□□ 0.95
SMARCA1P28370 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.96■□□□□ 0.95
SMARCA1P28370 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SMARCA1P28370 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SMARCA1P28370 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.96■□□□□ 0.95
SMARCA1P28370 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.96■□□□□ 0.95
SMARCA1P28370 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.96■□□□□ 0.95
SMARCA1P28370 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.96■□□□□ 0.95
SMARCA1P28370 LINC00602-201ENST00000629776 2065 ntBASIC20.96■□□□□ 0.95
SMARCA1P28370 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 AC135776.1-201ENST00000319817 2481 ntBASIC20.96■□□□□ 0.95
SMARCA1P28370 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.96■□□□□ 0.95
SMARCA1P28370 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
SMARCA1P28370 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCA1P28370 AC132938.6-201ENST00000623828 1655 ntBASIC20.96■□□□□ 0.95
SMARCA1P28370 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMARCA1P28370 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
SMARCA1P28370 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.95■□□□□ 0.94
SMARCA1P28370 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.95■□□□□ 0.94
SMARCA1P28370 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 TSPY12P-201ENST00000421279 868 ntBASIC20.95■□□□□ 0.94
SMARCA1P28370 DRAXINP1-201ENST00000437611 948 ntBASIC20.95■□□□□ 0.94
SMARCA1P28370 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCA1P28370 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCA1P28370 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
SMARCA1P28370 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMARCA1P28370 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SMARCA1P28370 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCA1P28370 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 AC068472.1-201ENST00000474589 881 ntBASIC20.94■□□□□ 0.94
SMARCA1P28370 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCA1P28370 MIR3180-1-201ENST00000580374 94 ntBASIC20.94■□□□□ 0.94
SMARCA1P28370 MIR3180-3-201ENST00000584616 94 ntBASIC20.94■□□□□ 0.94
SMARCA1P28370 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.94■□□□□ 0.94
SMARCA1P28370 IGHV3-41-201ENST00000613121 348 ntBASIC20.94■□□□□ 0.94
SMARCA1P28370 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCA1P28370 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms