Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AC079776.2-201ENST00000641154 1609 ntBASIC18.4■□□□□ 0.54
COL4A2P08572 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
COL4A2P08572 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
COL4A2P08572 HLA-J-201ENST00000462773 1622 ntBASIC18.39■□□□□ 0.53
COL4A2P08572 AC004832.2-201ENST00000426397 482 ntBASIC18.39■□□□□ 0.53
COL4A2P08572 KRT18P27-201ENST00000427733 1299 ntBASIC18.39■□□□□ 0.53
COL4A2P08572 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A2P08572 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A2P08572 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A2P08572 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 AC007967.3-201ENST00000434308 558 ntBASIC18.38■□□□□ 0.53
COL4A2P08572 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A2P08572 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL4A2P08572 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A2P08572 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A2P08572 KRT8P47-201ENST00000604727 1398 ntBASIC18.37■□□□□ 0.53
COL4A2P08572 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.37■□□□□ 0.53
COL4A2P08572 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 MIR940-201ENST00000401276 94 ntBASIC18.37■□□□□ 0.53
COL4A2P08572 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A2P08572 AC040169.1-201ENST00000565382 521 ntBASIC18.37■□□□□ 0.53
COL4A2P08572 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 AL691403.2-201ENST00000618460 490 ntBASIC18.37■□□□□ 0.53
COL4A2P08572 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A2P08572 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL4A2P08572 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A2P08572 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A2P08572 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A2P08572 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A2P08572 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.37■□□□□ 0.53
COL4A2P08572 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.37■□□□□ 0.53
COL4A2P08572 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A2P08572 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A2P08572 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A2P08572 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A2P08572 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A2P08572 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A2P08572 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A2P08572 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A2P08572 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.36■□□□□ 0.53
COL4A2P08572 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A2P08572 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A2P08572 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A2P08572 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A2P08572 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms