Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RB1P06400 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RB1P06400 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
RB1P06400 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.33■□□□□ 0.68
RB1P06400 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RB1P06400 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RB1P06400 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
RB1P06400 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 AC125437.2-201ENST00000625180 2167 ntBASIC19.32■□□□□ 0.68
RB1P06400 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.32■□□□□ 0.68
RB1P06400 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.32■□□□□ 0.68
RB1P06400 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.32■□□□□ 0.68
RB1P06400 AP001160.2-201ENST00000596071 487 ntBASIC19.32■□□□□ 0.68
RB1P06400 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RB1P06400 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.32■□□□□ 0.68
RB1P06400 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RB1P06400 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.32■□□□□ 0.68
RB1P06400 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.31■□□□□ 0.68
RB1P06400 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RB1P06400 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RB1P06400 AC073130.3-201ENST00000624389 2278 ntBASIC19.31■□□□□ 0.68
RB1P06400 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RB1P06400 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
RB1P06400 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.31■□□□□ 0.68
RB1P06400 YBX2P1-201ENST00000394192 760 ntBASIC19.31■□□□□ 0.68
RB1P06400 PMS2P2-201ENST00000425039 1128 ntBASIC19.31■□□□□ 0.68
RB1P06400 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.31■□□□□ 0.68
RB1P06400 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.31■□□□□ 0.68
RB1P06400 AC105339.3-201ENST00000560043 636 ntBASIC19.31■□□□□ 0.68
RB1P06400 AC012640.2-201ENST00000561606 901 ntBASIC19.31■□□□□ 0.68
RB1P06400 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.31■□□□□ 0.68
RB1P06400 AC010327.4-202ENST00000591484 748 ntBASIC19.31■□□□□ 0.68
RB1P06400 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 AC025062.2-201ENST00000605477 670 ntBASIC19.31■□□□□ 0.68
RB1P06400 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.31■□□□□ 0.68
RB1P06400 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RB1P06400 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
RB1P06400 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RB1P06400 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.3■□□□□ 0.68
RB1P06400 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.3■□□□□ 0.68
RB1P06400 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RB1P06400 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.3■□□□□ 0.68
RB1P06400 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.3■□□□□ 0.68
RB1P06400 AL139424.1-201ENST00000607572 797 ntBASIC19.3■□□□□ 0.68
RB1P06400 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.3■□□□□ 0.68
RB1P06400 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 AL024508.2-201ENST00000607749 1894 ntBASIC19.3■□□□□ 0.68
RB1P06400 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RB1P06400 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RB1P06400 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms