Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 TSPY12P-201ENST00000421279 868 ntBASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 LINC00167-201ENST00000530583 1419 ntBASIC18.32■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 KRT17P6-201ENST00000453795 1220 ntBASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 LINC01711-201ENST00000598340 967 ntBASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.31■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 FOSL1P1-201ENST00000511041 816 ntBASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 AC099336.1-202ENST00000602961 463 ntBASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
C1QTNF3-AMACRE9PGA6 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms