Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV7S3A2A0A539 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV7S3A2A0A539 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV7S3A2A0A539 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.64■□□□□ 0.57
TCRBV7S3A2A0A539 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 INGX-201ENST00000359239 846 ntBASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 SLC25A1P2-201ENST00000430693 912 ntBASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 WWOX-216ENST00000569818 525 ntBASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TCRBV7S3A2A0A539 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 AC007663.1-201ENST00000438948 1240 ntBASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 TSPY17P-201ENST00000450329 467 ntBASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 FITM1-202ENST00000559294 800 ntBASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms